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Guidelines
Suggested parameters and sets of instructions outlining best practices and standards for accomplishing specific animal care and use research duties.

Guidelines for Troubleshooting Breeding Difficulties in Mice

Unit for Laboratory Animal Medicine

| Approval Date:

April 17, 2026 12:00 am

Inbred and genetically modified mice can have low breeding efficiency, necessitating intervention or additional support. This document is intended to provide suggestions when identifying ‘problem breeders’ and options for improving breeding efficiency.

Responsibility

Investigators and laboratory staff members managing breeding

Glossary Definitions

Pair

Recommended breeding strategy using one adult female and one adult male resulting in a single litter. Takes advantage of postpartum estrus. Pair breeding has been proven to produce significantly more pups per female when compared to trio breeding and may be less stressful for both pups and dams than trio breeding.a,b

Related Terms: Trio Birthing, Trio Breeding, Harem

Trio Breeding

Alternative breeding strategy in which two adult females and one adult male are co-housed. Unless otherwise approved, one of the adult females must be removed prior to parturition such that no more than two adults and one litter are in the cage at any given time. Justification for overcrowding may be submitted to the IACUC and if approved, trio birthing may be used. Singly housed pregnant females or stud males should be labeled with a blue tab as described in the Identifying Single Housed Animals SOP.

Related Terms: Pair, Harem, Trio Birthing

Trio Birthing

Alternative breeding strategy in which two adult females and one adult male are co-housed and left together following the birth of pups, resulting in a maximum of two litters and three adults in a cage. To engage in trio birthing, justification for overcrowding must be submitted to and approved by the IACUC.

Related Terms: Pair, Harem, Trio Breeding

Harem

Alternative breeding strategy in which three to four adult females are co-housed with one adult male resulting in multiple pregnancies. All but one female must be removed from the cage prior to the birth of any pups. Justification to house two adult females, one adult male, and two litters in the cage as described by the definition of trio birthing may be submitted to the IACUC. Singly housed pregnant females or stud males should be labeled with a blue tab as described in the Identifying Single Housed Animals SOP.

Related Terms: Pair, Trio Breeding, Trio Birthing

Extended Wean

Mouse pups must be weaned by 21 days of age. However some phenotypes result in runted pups that may benefit from extending their weaning age. If extended weaning required for a given strain or phenotype, it should be described in the approved protocol. Where extended weaning is used, post-partum breeding may not be utilized, as it will result in more than 1 litter in the cage. Co-housing of older and younger litters in one cage is detrimental to the health and survival of the younger litter.

Breeding Record

A cage specific record that may include details such as breeder information, mating information, litter information, etc.

Procedures

1. Defining & documenting problem breeders

  1. Problem breeding may be defined by demonstration of one or more of the following metrics in at least three cages of pair housed breeders of the same strain or stock:
    1. Greater than 90 days since the mating date and no pups have been born.
    2. 4 or fewer pups born in each of the last two litters.
    3. Of the last four litters born, two or fewer had any pups survive to weaning.
    4. Or as otherwise determined by a ULAM Faculty Veterinarian.
  2. When attempting to determine which strains or stocks are difficult to breed, accurate breeding records are essential.

2. Troubleshooting & optimizing breeding efficiency through implementation of best practices

  1. The faculty veterinarians are an invaluable resource when attempting to troubleshoot breeding concerns. If breeding efficiency is unsatisfactory, contact the area faculty veterinarian for a consultation.
  2. Faculty veterinarians may suggest one or more of the following best practices to improve breeding performance:
    1. Review age of breeders: Females should be less than 9 months of age, ideally less than 6 months of age, and males should be less than a year old and have produced at least 1 pregnancy in the last 3 months.
    2. Cage placement in the room: Place breeding cages on the lowest shelf of their rack, and locate their rack away from areas of high traffic and light such as the door and flow hoods.
    3. Enrichment: Strains or stocks with poor breeding efficiency may benefit from both shredded paper, like Envirodry, and a nestlet. If available, a shelter may be beneficial as well.
    4. Nutritional support: Breeding females require a higher protein and fat diet. A diet formulated for breeding animals such as (PicoLab 5058), Love Mash (Bio-Serv), or the addition of irradiated sunflower seeds may improve the nutritional plane of breeding females. PicoLab 5058 is provided at no additional cost. The other two options may incur an additional cost if made part of the colony’s standard care.
      1. Some strains or stocks prone to obesity may experience decreased fertility with increasing body weight. For these animals, a standard diet that prevents significant increases in weight may be desirable.
    5. Seasonal changes: Breeding success has a natural cyclicity of decreasing in the winter months and improving in the summer months. Planning for this fluctuation can help maintain a stable population of target animals.
    6. Environmental factors: Vibration, noise, or fluctuations in humidity can impact breeding success. Minimized these factors when possible.
    7. Discontinuing use of post-partum breeding: While biologically possible, gestating a new litter while nursing a current one can compromise the health of the dam, and may retard the growth and survival of the current litter. This may result in smaller litter sizes. Allowing a dam to focus on rearing her current litter of pups rather than “gestating while lactating” may facilitate healthier litters.
  3. If the above changes do not improve breeding success, the next tier of intervention may include changing caging type or providing an “aunting” dam to reduce maternal stress. Note that there may be increases in per diem associated with these changes.
    1. Caging:
      1. Change from ventilated to static housing. (May require increased cage changing frequency to maintain sanitary standards).
      2. Change from translucent to opaque caging.
    2. Providing “aunting” support to the dam: Once pregnancy is confirmed, remove the male and add a non-pregnant, experienced dam or (if low milk yield is suspected), add a lactating dam (without additional pups), to support the pregnant dam.
      1. Use stocks or strains known for good mothering instincts (Swiss Webster or FVB/N) for “aunting”. These animals can come from within the research colony, or can be purchased as retired breeders or as timed pregnant females, as required, from approved rodent vendors.

3. Submitting justification for an amendment to breed in cages exceeding maximum mouse cage densities

  1. If the best practices described in Procedures section 2 improve breeding performance such that problem breeding is no longer a concern, continue to breed in cages within Guide-required cage densities.
    1. If despite the improved breeding performances, more than 2 adults and 1 litter housed in one cage is desired, contact the husbandry supervisor to request larger caging (at an increased per diem rate) that will support this increased cage density in accordance with the Guide cage-density requirements. Larger mouse caging is dependent on availability and space within the vivaria.
  2. If the best practices described in Procedures section 2 did not improve breeding parameters, submit justification to the IACUC via a protocol amendment to house more than 2 adults and 1 litter in a standard mouse cage.
    1. Justification must include a rationale for trio birthing in each strain of concern. Blanket justifications covering numerous strains may not be used.
  3. If the IACUC approves this exception to the Guide, request a SToP Form documenting IACUC approved overcrowding to be placed in the housing room.
    1. Label cages for which trio birthing is approved with a yellow acetate. The strain name listed on the cage card must be consistent with those listed on the SToP form and in the associated protocol.

4. Post-IACUC Approval

  1. Ensure justification is included with each three-year renewal of the associated protocol to maintain the exception to housing within Guide-required cage densities.

Appendices

Appendix A: Maximum Housing Densities for Mouse Cages

Appendix B: Maximum Housing Densities for Rat Cages

Appendix C: Rodent Breeding Record

Appendix D: Example of Completed Rodent Breeding Record

References

  1. Garner JP, Gaskill BN, Pritchett-Corning KR. (2016). Two of a Kind or a Full House? Reproductive Suppression and Alloparenting in Laboratory Mice. PLoS One. 11(5):e0154966.
    1. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0154966
  2. Gaskill B, Prichett-Corning KR. (2015). The Effect of Cage Space on Behavior and Reproduction in Crl:CD1(Icr)and C5BL/6NCrl Laboratory Mice. PLoS ONE 10(5): e0127875
    1. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127875

SPECIES: Mice / Rats

Questions?

If you have questions or comments about this document, contact ULAM Veterinary Staff (email [email protected] or call 734-936-1696).

The Animal Care and Use Office (email [email protected] or call 734-763-8028) can answer IACUC specific questions regarding committee review of scientific justification to support Guide exceptions.

The ULAM Training Core (email [email protected] or call 734-763-8039) can be contacted to provide training in techniques at no charge.

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